20 Session info

sessionInfo()

## R version 4.3.1 (2023-06-16)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.6 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0 
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=sv_SE.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=sv_SE.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=sv_SE.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=sv_SE.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: Europe/Stockholm
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats4    grid      stats     graphics  grDevices
## [6] utils     datasets  methods   base     
## 
## other attached packages:
##  [1] ggthemes_4.2.4         gridExtra_2.3         
##  [3] containerit_0.6.0.9004 lubridate_1.9.2       
##  [5] forcats_1.0.0          purrr_1.0.1           
##  [7] tibble_3.2.1           tidyverse_2.0.0       
##  [9] caret_6.0-94           lattice_0.21-8        
## [11] pROC_1.18.4            randomForest_4.7-1.1  
## [13] DescTools_0.99.49      uwot_0.1.16           
## [15] Matrix_1.6-0           ineq_0.2-13           
## [17] readr_2.1.4            stringr_1.5.0         
## [19] treeio_1.24.1          GenomicRanges_1.52.0  
## [21] GenomeInfoDb_1.36.1    IRanges_2.34.1        
## [23] S4Vectors_0.38.1       BiocGenerics_0.46.0   
## [25] dplyr_1.1.2            ggrastr_1.0.2         
## [27] Polychrome_1.5.1       circlize_0.4.15       
## [29] ggrepel_0.9.3          ggbeeswarm_0.7.2      
## [31] ggtree_3.8.0           patchwork_1.1.2       
## [33] ggdendro_0.1.23        ggpubr_0.6.0          
## [35] viridis_0.6.3          viridisLite_0.4.2     
## [37] pbapply_1.7-2          TCGAbiolinks_2.28.3   
## [39] maftools_2.16.0        tidyr_1.3.0           
## [41] ComplexHeatmap_2.16.0  RColorBrewer_1.1-3    
## [43] ggsci_3.0.0            cowplot_1.1.1         
## [45] ggplot2_3.4.2          data.table_1.14.8     
## 
## loaded via a namespace (and not attached):
##   [1] fs_1.6.2                   
##   [2] matrixStats_1.0.0          
##   [3] bitops_1.0-7               
##   [4] httr_1.4.6                 
##   [5] doParallel_1.0.17          
##   [6] tools_4.3.1                
##   [7] backports_1.4.1            
##   [8] utf8_1.2.3                 
##   [9] R6_2.5.1                   
##  [10] lazyeval_0.2.2             
##  [11] GetoptLong_1.0.5           
##  [12] withr_2.5.0                
##  [13] prettyunits_1.1.1          
##  [14] versions_0.3               
##  [15] cli_3.6.1                  
##  [16] Biobase_2.60.0             
##  [17] formatR_1.14               
##  [18] Cairo_1.6-0                
##  [19] labeling_0.4.2             
##  [20] sass_0.4.6                 
##  [21] mvtnorm_1.2-2              
##  [22] proxy_0.4-27               
##  [23] yulab.utils_0.0.6          
##  [24] dbscan_1.1-11              
##  [25] R.utils_2.12.2             
##  [26] parallelly_1.36.0          
##  [27] readxl_1.4.3               
##  [28] rstudioapi_0.15.0          
##  [29] RSQLite_2.3.1              
##  [30] FNN_1.1.3.2                
##  [31] generics_0.1.3             
##  [32] gridGraphics_0.5-1         
##  [33] shape_1.4.6                
##  [34] gtools_3.9.4               
##  [35] vroom_1.6.3                
##  [36] car_3.1-2                  
##  [37] futile.logger_1.4.3        
##  [38] fansi_1.0.4                
##  [39] abind_1.4-5                
##  [40] R.methodsS3_1.8.2          
##  [41] lifecycle_1.0.3            
##  [42] scatterplot3d_0.3-44       
##  [43] yaml_2.3.7                 
##  [44] carData_3.0-5              
##  [45] SummarizedExperiment_1.30.2
##  [46] recipes_1.0.6              
##  [47] BiocFileCache_2.8.0        
##  [48] blob_1.2.4                 
##  [49] promises_1.2.0.1           
##  [50] crayon_1.5.2               
##  [51] miniUI_0.1.1.1             
##  [52] KEGGREST_1.40.0            
##  [53] pillar_1.9.0               
##  [54] knitr_1.43                 
##  [55] rjson_0.2.21               
##  [56] boot_1.3-28.1              
##  [57] gld_2.6.6                  
##  [58] TCGAbiolinksGUI.data_1.20.0
##  [59] future.apply_1.11.0        
##  [60] codetools_0.2-19           
##  [61] glue_1.6.2                 
##  [62] downloader_0.4             
##  [63] ggfun_0.1.1                
##  [64] vctrs_0.6.3                
##  [65] png_0.1-8                  
##  [66] cellranger_1.1.0           
##  [67] gtable_0.3.3               
##  [68] cachem_1.0.8               
##  [69] gower_1.0.1                
##  [70] xfun_0.39                  
##  [71] mime_0.12                  
##  [72] S4Arrays_1.0.4             
##  [73] prodlim_2023.03.31         
##  [74] survival_3.5-5             
##  [75] timeDate_4022.108          
##  [76] iterators_1.0.14           
##  [77] hardhat_1.3.0              
##  [78] lava_1.7.2.1               
##  [79] ellipsis_0.3.2             
##  [80] ipred_0.9-14               
##  [81] nlme_3.1-162               
##  [82] bit64_4.0.5                
##  [83] RcppAnnoy_0.0.21           
##  [84] progress_1.2.2             
##  [85] filelock_1.0.2             
##  [86] rprojroot_2.0.3            
##  [87] bslib_0.5.0                
##  [88] irlba_2.3.5.1              
##  [89] vipor_0.4.5                
##  [90] rpart_4.1.19               
##  [91] colorspace_2.1-0           
##  [92] DBI_1.1.3                  
##  [93] nnet_7.3-19                
##  [94] DNAcopy_1.74.1             
##  [95] Exact_3.2                  
##  [96] tidyselect_1.2.0           
##  [97] bit_4.0.5                  
##  [98] compiler_4.3.1             
##  [99] curl_5.0.1                 
## [100] rvest_1.0.3                
## [101] expm_0.999-7               
## [102] xml2_1.3.5                 
## [103] desc_1.4.2                 
## [104] DelayedArray_0.26.6        
## [105] bookdown_0.34              
## [106] scales_1.2.1               
## [107] rappdirs_0.3.3             
## [108] digest_0.6.33              
## [109] rmarkdown_2.23             
## [110] XVector_0.40.0             
## [111] htmltools_0.5.5            
## [112] pkgconfig_2.0.3            
## [113] MatrixGenerics_1.12.2      
## [114] highr_0.10                 
## [115] dbplyr_2.3.3               
## [116] fastmap_1.1.1              
## [117] rlang_1.1.1                
## [118] GlobalOptions_0.1.2        
## [119] shiny_1.7.4.1              
## [120] farver_2.1.1               
## [121] jquerylib_0.1.4            
## [122] jsonlite_1.8.7             
## [123] ModelMetrics_1.2.2.2       
## [124] R.oo_1.25.0                
## [125] RCurl_1.98-1.12            
## [126] magrittr_2.0.3             
## [127] GenomeInfoDbData_1.2.10    
## [128] ggplotify_0.1.1            
## [129] munsell_0.5.0              
## [130] Rcpp_1.0.11                
## [131] ape_5.7-1                  
## [132] stringi_1.7.12             
## [133] rootSolve_1.8.2.3          
## [134] zlibbioc_1.46.0            
## [135] MASS_7.3-60                
## [136] plyr_1.8.8                 
## [137] shinyFiles_0.9.3           
## [138] parallel_4.3.1             
## [139] listenv_0.9.0              
## [140] lmom_2.9                   
## [141] semver_0.2.0               
## [142] Biostrings_2.68.1          
## [143] splines_4.3.1              
## [144] hms_1.1.3                  
## [145] ggsignif_0.6.4             
## [146] reshape2_1.4.4             
## [147] biomaRt_2.56.1             
## [148] futile.options_1.0.1       
## [149] XML_3.99-0.14              
## [150] evaluate_0.21              
## [151] stevedore_0.9.6            
## [152] lambda.r_1.2.4             
## [153] httpuv_1.6.11              
## [154] tzdb_0.4.0                 
## [155] foreach_1.5.2              
## [156] future_1.33.0              
## [157] clue_0.3-64                
## [158] xtable_1.8-4               
## [159] broom_1.0.5                
## [160] e1071_1.7-13               
## [161] tidytree_0.4.2             
## [162] later_1.3.1                
## [163] rstatix_0.7.2              
## [164] class_7.3-22               
## [165] aplot_0.1.10               
## [166] memoise_2.0.1              
## [167] beeswarm_0.4.0             
## [168] AnnotationDbi_1.62.2       
## [169] cluster_2.1.4              
## [170] timechange_0.2.0           
## [171] globals_0.16.2

20.1 Dockerfile

require(containerit)
dockerfile = dockerfile(from = utils::sessionInfo(),
                        versioned_libs = TRUE,
                        versioned_packages = TRUE)

## INFO [2023-08-17 12:18:20] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:20] Trying to determine system requirements for the package(s) 'BiocGenerics' from sysreqs online DB
## INFO [2023-08-17 12:18:21] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:21] Trying to determine system requirements for the package(s) 'caret' from sysreqs online DB
## INFO [2023-08-17 12:18:22] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:22] Trying to determine system requirements for the package(s) 'circlize' from sysreqs online DB
## INFO [2023-08-17 12:18:23] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:23] Trying to determine system requirements for the package(s) 'ComplexHeatmap' from sysreqs online DB
## INFO [2023-08-17 12:18:24] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:24] Trying to determine system requirements for the package(s) 'cowplot' from sysreqs online DB
## INFO [2023-08-17 12:18:25] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:25] Trying to determine system requirements for the package(s) 'data.table' from sysreqs online DB
## INFO [2023-08-17 12:18:26] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:26] Trying to determine system requirements for the package(s) 'DescTools' from sysreqs online DB
## INFO [2023-08-17 12:18:27] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:27] Trying to determine system requirements for the package(s) 'dplyr' from sysreqs online DB
## INFO [2023-08-17 12:18:28] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:28] Trying to determine system requirements for the package(s) 'forcats' from sysreqs online DB
## INFO [2023-08-17 12:18:28] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:28] Trying to determine system requirements for the package(s) 'GenomeInfoDb' from sysreqs online DB
## INFO [2023-08-17 12:18:29] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:29] Trying to determine system requirements for the package(s) 'GenomicRanges' from sysreqs online DB
## INFO [2023-08-17 12:18:31] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:31] Trying to determine system requirements for the package(s) 'ggbeeswarm' from sysreqs online DB
## INFO [2023-08-17 12:18:32] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:32] Trying to determine system requirements for the package(s) 'ggdendro' from sysreqs online DB
## INFO [2023-08-17 12:18:33] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:33] Trying to determine system requirements for the package(s) 'ggplot2' from sysreqs online DB
## INFO [2023-08-17 12:18:33] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:33] Trying to determine system requirements for the package(s) 'ggpubr' from sysreqs online DB
## INFO [2023-08-17 12:18:34] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:34] Trying to determine system requirements for the package(s) 'ggrastr' from sysreqs online DB
## INFO [2023-08-17 12:18:35] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:35] Trying to determine system requirements for the package(s) 'ggrepel' from sysreqs online DB
## INFO [2023-08-17 12:18:37] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:37] Trying to determine system requirements for the package(s) 'ggsci' from sysreqs online DB
## INFO [2023-08-17 12:18:38] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:38] Trying to determine system requirements for the package(s) 'ggthemes' from sysreqs online DB
## INFO [2023-08-17 12:18:39] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:39] Trying to determine system requirements for the package(s) 'ggtree' from sysreqs online DB
## INFO [2023-08-17 12:18:40] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:40] Trying to determine system requirements for the package(s) 'gridExtra' from sysreqs online DB
## INFO [2023-08-17 12:18:41] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:41] Trying to determine system requirements for the package(s) 'ineq' from sysreqs online DB
## INFO [2023-08-17 12:18:42] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:42] Trying to determine system requirements for the package(s) 'IRanges' from sysreqs online DB
## INFO [2023-08-17 12:18:43] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:43] Trying to determine system requirements for the package(s) 'lattice' from sysreqs online DB
## INFO [2023-08-17 12:18:43] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:43] Trying to determine system requirements for the package(s) 'lubridate' from sysreqs online DB
## INFO [2023-08-17 12:18:44] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:44] Trying to determine system requirements for the package(s) 'maftools' from sysreqs online DB
## INFO [2023-08-17 12:18:45] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:45] Trying to determine system requirements for the package(s) 'Matrix' from sysreqs online DB
## INFO [2023-08-17 12:18:46] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:46] Trying to determine system requirements for the package(s) 'patchwork' from sysreqs online DB
## INFO [2023-08-17 12:18:47] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:47] Trying to determine system requirements for the package(s) 'pbapply' from sysreqs online DB
## INFO [2023-08-17 12:18:48] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:48] Trying to determine system requirements for the package(s) 'Polychrome' from sysreqs online DB
## INFO [2023-08-17 12:18:49] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:49] Trying to determine system requirements for the package(s) 'pROC' from sysreqs online DB
## INFO [2023-08-17 12:18:50] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:50] Trying to determine system requirements for the package(s) 'purrr' from sysreqs online DB
## INFO [2023-08-17 12:18:51] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:51] Trying to determine system requirements for the package(s) 'randomForest' from sysreqs online DB
## INFO [2023-08-17 12:18:52] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:52] Trying to determine system requirements for the package(s) 'RColorBrewer' from sysreqs online DB
## INFO [2023-08-17 12:18:53] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:53] Trying to determine system requirements for the package(s) 'readr' from sysreqs online DB
## INFO [2023-08-17 12:18:54] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:54] Trying to determine system requirements for the package(s) 'S4Vectors' from sysreqs online DB
## INFO [2023-08-17 12:18:55] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:55] Trying to determine system requirements for the package(s) 'stringr' from sysreqs online DB
## INFO [2023-08-17 12:18:56] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:56] Trying to determine system requirements for the package(s) 'TCGAbiolinks' from sysreqs online DB
## INFO [2023-08-17 12:18:56] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:56] Trying to determine system requirements for the package(s) 'tibble' from sysreqs online DB
## INFO [2023-08-17 12:18:57] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:57] Trying to determine system requirements for the package(s) 'tidyr' from sysreqs online DB
## INFO [2023-08-17 12:18:58] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:58] Trying to determine system requirements for the package(s) 'tidyverse' from sysreqs online DB
## INFO [2023-08-17 12:18:59] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:18:59] Trying to determine system requirements for the package(s) 'treeio' from sysreqs online DB
## INFO [2023-08-17 12:19:00] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:19:00] Trying to determine system requirements for the package(s) 'uwot' from sysreqs online DB
## INFO [2023-08-17 12:19:01] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:19:01] Trying to determine system requirements for the package(s) 'viridis' from sysreqs online DB
## INFO [2023-08-17 12:19:02] Going online? TRUE  ... to retrieve system dependencies (sysreq-api)
## INFO [2023-08-17 12:19:02] Trying to determine system requirements for the package(s) 'viridisLite' from sysreqs online DB
## INFO [2023-08-17 12:19:03] Versioned packages enabled, installing 'versions'
## INFO [2023-08-17 12:19:03] Adding versioned CRAN packages: ggthemes, gridExtra, lubridate, forcats, purrr, tibble, tidyverse, caret, lattice, pROC, randomForest, DescTools, uwot, Matrix, ineq, readr, stringr, dplyr, ggrastr, Polychrome, circlize, ggrepel, ggbeeswarm, patchwork, ggdendro, ggpubr, viridis, viridisLite, pbapply, tidyr, RColorBrewer, ggsci, cowplot, ggplot2, data.table
## WARN [2023-08-17 12:19:03] Adding versioned Bioconductor packages not supported: treeio, GenomicRanges, GenomeInfoDb, IRanges, S4Vectors, BiocGenerics, ggtree, TCGAbiolinks, maftools, ComplexHeatmap
## INFO [2023-08-17 12:19:03] Adding Bioconductor packages: BiocGenerics, ComplexHeatmap, GenomeInfoDb, GenomicRanges, ggtree, IRanges, maftools, S4Vectors, TCGAbiolinks, treeio
## INFO [2023-08-17 12:19:03] Created Dockerfile-Object based on sessionInfo

print(dockerfile)

## FROM rocker/r-ver:4.3.1
## LABEL maintainer="luukharbers"
## RUN export DEBIAN_FRONTEND=noninteractive; apt-get -y update \
##   && apt-get install -y zlib1g-dev
## RUN ["install2.r", "versions"]
## RUN ["Rscript", "-e", "versions::install.versions('caret', '6.0-94')", "-e", "versions::install.versions('circlize', '0.4.15')", "-e", "versions::install.versions('cowplot', '1.1.1')", "-e", "versions::install.versions('data.table', '1.14.8')", "-e", "versions::install.versions('DescTools', '0.99.49')", "-e", "versions::install.versions('dplyr', '1.1.2')", "-e", "versions::install.versions('forcats', '1.0.0')", "-e", "versions::install.versions('ggbeeswarm', '0.7.2')", "-e", "versions::install.versions('ggdendro', '0.1.23')", "-e", "versions::install.versions('ggplot2', '3.4.2')", "-e", "versions::install.versions('ggpubr', '0.6.0')", "-e", "versions::install.versions('ggrastr', '1.0.2')", "-e", "versions::install.versions('ggrepel', '0.9.3')", "-e", "versions::install.versions('ggsci', '3.0.0')", "-e", "versions::install.versions('ggthemes', '4.2.4')", "-e", "versions::install.versions('gridExtra', '2.3')", "-e", "versions::install.versions('ineq', '0.2-13')", "-e", "versions::install.versions('lattice', '0.21-8')", "-e", "versions::install.versions('lubridate', '1.9.2')", "-e", "versions::install.versions('Matrix', '1.6-0')", "-e", "versions::install.versions('patchwork', '1.1.2')", "-e", "versions::install.versions('pbapply', '1.7-2')", "-e", "versions::install.versions('Polychrome', '1.5.1')", "-e", "versions::install.versions('pROC', '1.18.4')", "-e", "versions::install.versions('purrr', '1.0.1')", "-e", "versions::install.versions('randomForest', '4.7-1.1')", "-e", "versions::install.versions('RColorBrewer', '1.1-3')", "-e", "versions::install.versions('readr', '2.1.4')", "-e", "versions::install.versions('stringr', '1.5.0')", "-e", "versions::install.versions('tibble', '3.2.1')", "-e", "versions::install.versions('tidyr', '1.3.0')", "-e", "versions::install.versions('tidyverse', '2.0.0')", "-e", "versions::install.versions('uwot', '0.1.16')", "-e", "versions::install.versions('viridis', '0.6.3')", "-e", "versions::install.versions('viridisLite', '0.4.2')"]
## RUN ["install2.r", "-r https://bioconductor.org/packages/3.17/bioc -r https://bioconductor.org/packages/3.17/data/annotation -r https://bioconductor.org/packages/3.17/data/experiment -r https://bioconductor.org/packages/3.17/workflows", "BiocGenerics", "ComplexHeatmap", "GenomeInfoDb", "GenomicRanges", "ggtree", "IRanges", "maftools", "S4Vectors", "TCGAbiolinks", "treeio"]
## WORKDIR /payload/
## CMD ["R"]